Here's something else to take a look at...
There's a three pin connector going to each tail light. On the tail light there's a red, green, and black wires. My question is, how are yours wired (meaning what color is going to what color).
They should be, according to the wiring diagram:
Right rear -
Pin 1 - the red from the light should be connected to a red from the bike.
Pin 2 - the green from the light should be connected to a brown from the bike.
Pin 3 - the black from the light should be connected to a black from the bike.
Left rear -
Pin 1 - the red from the light should be connected to a GREEN from the bike.
Pin 2 - the green from the light should be connected to a violet from the bike.
Pin 3 - the black from the light should be connected to a black from the bike.
It makes no sense to me that on the left rear they'd have a color combo like that! It would make it very easy to connect the green to green assuming it's correct but by doing that you'd have the brake and turn signal lights cross wired!
Just another thought...
Dennis
PS You could also disconnect J-4 and both rear lights then check continuity to see if they're wired correctly.